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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13623 and 13624 are separated by 1804 nucleotides
13624 and 13625 are separated by 1986 nucleotides
13625 and 13626 are separated by 199 nucleotides
13626 and 13627 are separated by 419 nucleotides
mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284,038 to 290,339
13623
mRNA_5256: 13624 - SUPERFAMILY--SSF53448, at 292,144 to 293,863
13624
mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525
13625
mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742
13626
mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995
13627
Group
Condition
mRNA
_5255
mRNA
_5256
mRNA
_5257
mRNA
_5258
mRNA
_5259
13623
13624
13625
13626
13627
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
+0.2
-0.4
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
-0.5
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.2
-0.4
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.3
-0.4
-0.5
auxotrophy
Dropout Complete
N.D.
+0.0
-0.1
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.1
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.3
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.6
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.8
-0.5
-0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.7
+0.4
-0.8
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+1.2
-0.9
-0.3
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.5
+0.1
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.2
+0.2
growth on ypd
YPD
N.D.
+0.5
+0.5
-0.4
-0.3
auxotrophy
YNB Glucose
N.D.
+0.7
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
+0.4
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
+0.4
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.1
+0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.2
-0.3
+0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.7
+0.3
+0.2
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.5
+0.2
-0.0
-0.1
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