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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13624 and 13625 are separated by 1986 nucleotides
13625 and 13626 are separated by 199 nucleotides
13626 and 13627 are separated by 419 nucleotides
13627 and 13628 are separated by 756 nucleotides
mRNA_5256: 13624 - SUPERFAMILY--SSF53448, at 292,144 to 293,863
13624
mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525
13625
mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742
13626
mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995
13627
mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302,752 to 303,807
13628
Group
Condition
mRNA
_5256
mRNA
_5257
mRNA
_5258
mRNA
_5259
mRNA
_5260
13624
13625
13626
13627
13628
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.2
-0.4
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.5
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.4
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
-0.4
-0.5
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
-0.3
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.1
-0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.3
-0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.6
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.5
-0.4
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.4
-0.8
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
-0.9
-0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.5
+0.1
-0.3
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
+0.2
N.D.
growth on ypd
YPD
+0.5
+0.5
-0.4
-0.3
N.D.
auxotrophy
YNB Glucose
+0.7
+0.2
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.4
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+1.0
+0.4
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
+0.4
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.2
-0.3
+0.5
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.7
+0.3
+0.2
-0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.5
+0.2
-0.0
-0.1
N.D.
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