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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13625 and 13626 are separated by 199 nucleotides
13626 and 13627 are separated by 419 nucleotides
13627 and 13628 are separated by 756 nucleotides
13628 and 13629 are separated by 580 nucleotides
mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525
13625
mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742
13626
mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995
13627
mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302,752 to 303,807
13628
mRNA_5261: 13629 - K01173 ENDOG endonuclease G, mitochondrial, at 304,388 to 306,039
13629
Group
Condition
mRNA
_5257
mRNA
_5258
mRNA
_5259
mRNA
_5260
mRNA
_5261
13625
13626
13627
13628
13629
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.4
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
-0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.3
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
-0.7
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.4
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.8
-0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.3
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.4
-0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.3
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
-0.6
N.D.
N.D.
growth on ypd
YPD
+0.5
-0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
+0.1
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.5
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.4
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
+0.4
N.D.
N.D.
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