Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13625 and 13626 are separated by 199 nucleotides13626 and 13627 are separated by 419 nucleotides13627 and 13628 are separated by 756 nucleotides13628 and 13629 are separated by 580 nucleotides mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525 13625 mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995 13627 mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302,752 to 303,807 13628 mRNA_5261: 13629 - K01173 ENDOG endonuclease G, mitochondrial, at 304,388 to 306,039 13629
Group Condition mRNA_5257 mRNA_5258 mRNA_5259 mRNA_5260 mRNA_5261
13625 13626 13627 13628 13629
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.4 -0.7 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.4 -0.3 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.9 -0.3 +0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 -0.3 -0.1 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.4 -0.7 N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.3 -0.3 -0.5 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 -0.4 -0.1 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 -0.8 -0.5 N.D. N.D.
auxotrophy Dropout Complete -0.1 -0.3 -0.4 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.1 -0.5 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.4 -0.5 N.D. N.D.
growth on oleic acid YNB Glucose +0.1 -0.3 -0.3 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.2 -0.6 N.D. N.D.
growth on ypd YPD +0.5 -0.4 -0.3 N.D. N.D.
auxotrophy YNB Glucose +0.2 +0.1 -0.3 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 +0.5 -0.0 N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.0 -0.1 N.D. N.D.
growth on ricinoleic acid YNB Glucose +0.4 +0.2 -0.4 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.2 +0.2 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.4 +0.4 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.4 +0.4 N.D. N.D.
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