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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13628 and 13629 are separated by 580 nucleotides
13629 and 13630 are separated by 836 nucleotides
13630 and 13631 are separated by 465 nucleotides
13631 and 13632 are separated by 563 nucleotides
mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302,752 to 303,807
13628
mRNA_5261: 13629 - K01173 ENDOG endonuclease G, mitochondrial, at 304,388 to 306,039
13629
mRNA_5262: 13630 - K00161 PDHA, pdhA pyruvate dehydrogenase E1 component alpha subunit, at 306,876 to 308,801
13630
mRNA_5263: 13631 - BLAST pyruvate dehydrogenase E1 component subunit alpha [Mi..., at 309,267 to 309,581
13631
mRNA_5264: 13632 - Hypothetical Protein, at 310,145 to 311,167
13632
Group
Condition
mRNA
_5260
mRNA
_5261
mRNA
_5262
mRNA
_5263
mRNA
_5264
13628
13629
13630
13631
13632
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.1
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.0
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.0
-0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.1
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.1
+0.4
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