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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13630 and 13631 are separated by 465 nucleotides
13631 and 13632 are separated by 563 nucleotides
13632 and 13633 are separated by 454 nucleotides
13633 and 13634 are separated by 1489 nucleotides
mRNA_5262: 13630 - K00161 PDHA, pdhA pyruvate dehydrogenase E1 component alpha subunit, at 306,876 to 308,801
13630
mRNA_5263: 13631 - BLAST pyruvate dehydrogenase E1 component subunit alpha [Mi..., at 309,267 to 309,581
13631
mRNA_5264: 13632 - Hypothetical Protein, at 310,145 to 311,167
13632
mRNA_5265: 13633 - K18749 LSM14, RAP55, SCD6 protein LSM14, at 311,622 to 313,606
13633
mRNA_5266: 13634 - K03262 EIF5 translation initiation factor 5, at 315,096 to 316,635
13634
Group
Condition
mRNA
_5262
mRNA
_5263
mRNA
_5264
mRNA
_5265
mRNA
_5266
13630
13631
13632
13633
13634
growth on ypd
YPD
N.D.
-0.0
-0.5
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.5
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.3
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.5
+0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
-0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.4
-0.0
N.D.
auxotrophy
Dropout Complete
N.D.
+0.0
-0.2
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.3
+0.9
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.1
+0.7
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.3
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.3
+0.4
N.D.
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