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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13637 and 13638 are separated by 1344 nucleotides
13638 and 13639 are separated by 534 nucleotides
13639 and 13640 are separated by 216 nucleotides
13640 and 13641 are separated by 438 nucleotides
mRNA_5269: 13637 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 322,459 to 324,944
13637
mRNA_5270: 13638 - Hypothetical Protein, at 326,289 to 326,690
13638
mRNA_5271: 13639 - K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10, at 327,225 to 330,329
13639
mRNA_5272: 13640 - K02731 PSMA7 20S proteasome subunit alpha 4, at 330,546 to 332,091
13640
mRNA_5273: 13641 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 332,530 to 334,206
13641
Group
Condition
mRNA
_5269
mRNA
_5270
mRNA
_5271
mRNA
_5272
mRNA
_5273
13637
13638
13639
13640
13641
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
-0.6
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.3
-0.5
-1.1
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.5
-0.9
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.6
-0.5
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-0.6
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-1.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.8
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.8
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.6
N.D.
-0.1
auxotrophy
YNB Glucose
-0.2
+0.1
-0.5
N.D.
-0.3
auxotrophy
Dropout Complete
+0.2
-0.2
-0.8
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
-0.3
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
-0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.4
-0.6
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.0
-0.6
N.D.
+0.1
growth on ypd
YPD
+0.1
-0.4
+0.3
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.0
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.2
N.D.
+0.3
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