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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13642 and 13643 are separated by 334 nucleotides
13643 and 13644 are separated by 920 nucleotides
13644 and 13645 are separated by 156 nucleotides
13645 and 13646 are separated by 274 nucleotides
mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334,553 to 337,184
13642
mRNA_5275: 13643 - K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C, at 337,519 to 338,338
13643
mRNA_5276: 13644 - Hypothetical Protein, at 339,259 to 340,241
13644
mRNA_5277: 13645 - Hypothetical Protein, at 340,398 to 341,217
13645
mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341,492 to 344,533
13646
Group
Condition
mRNA
_5274
mRNA
_5275
mRNA
_5276
mRNA
_5277
mRNA
_5278
13642
13643
13644
13645
13646
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-1.0
-0.0
-0.5
-0.4
growth on oleic acid
YNB Oleic Acid
-1.0
-0.7
+0.0
-0.2
-0.3
growth on oleic acid
YNB Glucose
-1.2
-0.4
-0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
+0.3
-0.2
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-1.3
-0.0
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.0
+0.3
-0.2
-0.1
-0.6
auxotrophy
YNB Glucose
-0.7
+0.0
-0.2
-0.1
-0.4
auxotrophy
Dropout Complete
-1.0
-0.1
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.6
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.3
+0.3
-0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-1.2
+0.6
-0.1
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.0
-0.3
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.4
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.9
+0.2
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
+0.2
-0.1
growth on ypd
YPD
-0.3
+0.1
+0.4
+0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
+0.0
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
-0.5
+0.4
-0.0
-0.1
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