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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13644 and 13645 are separated by 156 nucleotides
13645 and 13646 are separated by 274 nucleotides
13646 and 13647 are separated by 411 nucleotides
13647 and 13648 are separated by 886 nucleotides
mRNA_5276: 13644 - Hypothetical Protein, at 339,259 to 340,241
13644
mRNA_5277: 13645 - Hypothetical Protein, at 340,398 to 341,217
13645
mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341,492 to 344,533
13646
mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344,945 to 347,664
13647
mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348,551 to 349,893
13648
Group
Condition
mRNA
_5276
mRNA
_5277
mRNA
_5278
mRNA
_5279
mRNA
_5280
13644
13645
13646
13647
13648
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.6
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.5
-0.4
-0.1
-0.2
auxotrophy
YNB Glucose
-0.2
-0.1
-0.4
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
-0.4
-0.7
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.4
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.6
+0.1
-0.2
-0.5
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
-0.3
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
+0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.4
-0.3
-0.1
auxotrophy
Dropout Complete
+0.1
-0.1
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.3
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.2
-0.0
+0.0
growth on oleic acid
YNB Glucose
-0.3
+0.0
-0.2
-0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.0
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.3
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.1
-0.2
growth on ypd
YPD
+0.4
+0.4
-0.5
-0.2
+1.1
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