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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13646 and 13647 are separated by 411 nucleotides
13647 and 13648 are separated by 886 nucleotides
13648 and 13649 are separated by 771 nucleotides
13649 and 13650 are separated by 289 nucleotides
mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341,492 to 344,533
13646
mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344,945 to 347,664
13647
mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348,551 to 349,893
13648
mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350,665 to 352,490
13649
mRNA_5282: 13650 - Hypothetical Protein, at 352,780 to 353,603
13650
Group
Condition
mRNA
_5278
mRNA
_5279
mRNA
_5280
mRNA
_5281
mRNA
_5282
13646
13647
13648
13649
13650
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.2
-0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.6
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.7
+0.4
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose
-0.4
-0.0
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.3
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
-0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.5
+0.1
N.D.
auxotrophy
Dropout Complete
-0.4
+0.1
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
+0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
+0.3
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
+0.2
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-0.3
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.3
+0.7
N.D.
growth on ypd
YPD
-0.5
-0.2
+1.1
+0.0
N.D.
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