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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13649 and 13650 are separated by 289 nucleotides
13650 and 13651 are separated by 152 nucleotides
13651 and 13652 are separated by 1477 nucleotides
13652 and 13653 are separated by 718 nucleotides
mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350,665 to 352,490
13649
mRNA_5282: 13650 - Hypothetical Protein, at 352,780 to 353,603
13650
mRNA_5283: 13651 - Hypothetical Protein, at 353,756 to 354,946
13651
mRNA_5284: 13652 - Hypothetical Protein, at 356,424 to 357,463
13652
mRNA_5285: 13653 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 358,182 to 359,480
13653
Group
Condition
mRNA
_5281
mRNA
_5282
mRNA
_5283
mRNA
_5284
mRNA
_5285
13649
13650
13651
13652
13653
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
-0.2
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.1
-0.8
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.4
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.2
-0.3
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.2
-0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.2
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.0
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.2
+0.1
-0.5
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.0
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.1
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.2
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.2
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
N.D.
-1.5
+1.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-0.3
+0.3
-0.0
auxotrophy
Dropout Complete
+0.1
N.D.
+0.0
+0.3
-0.4
auxotrophy
YNB Glucose
+0.1
N.D.
+0.2
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.5
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.3
+0.5
-0.3
growth on ypd
YPD
+0.0
N.D.
+0.7
+0.5
+0.6
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