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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13652 and 13653 are separated by 718 nucleotides
13653 and 13654 are separated by 286 nucleotides
13654 and 13655 are separated by 479 nucleotides
13655 and 13656 are separated by 303 nucleotides
mRNA_5284: 13652 - Hypothetical Protein, at 356,424 to 357,463
13652
mRNA_5285: 13653 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 358,182 to 359,480
13653
mRNA_5286: 13654 - Hypothetical Protein, at 359,767 to 360,966
13654
mRNA_5287: 13655 - KOG0835 Cyclin L, at 361,446 to 362,639
13655
mRNA_5288: 13656 - HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785, at 362,943 to 363,833
13656
Group
Condition
mRNA
_5284
mRNA
_5285
mRNA
_5286
mRNA
_5287
mRNA
_5288
13652
13653
13654
13655
13656
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.1
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
-0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.7
-0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.3
-0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
-0.3
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.6
-0.0
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
-0.2
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.1
N.D.
+0.5
auxotrophy
Dropout Complete
+0.3
-0.4
-0.3
N.D.
+0.4
auxotrophy
YNB Glucose
+0.3
-0.5
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
-0.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.3
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.5
-0.3
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.1
-0.5
-0.5
N.D.
+0.8
growth on ypd
YPD
+0.5
+0.6
-0.3
N.D.
+0.2
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