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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13654 and 13655 are separated by 479 nucleotides
13655 and 13656 are separated by 303 nucleotides
13656 and 13657 are separated by 103 nucleotides
13657 and 13658 are separated by 421 nucleotides
mRNA_5286: 13654 - Hypothetical Protein, at 359,767 to 360,966
13654
mRNA_5287: 13655 - KOG0835 Cyclin L, at 361,446 to 362,639
13655
mRNA_5288: 13656 - HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785, at 362,943 to 363,833
13656
mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363,937 to 365,504
13657
mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365,926 to 369,880
13658
Group
Condition
mRNA
_5286
mRNA
_5287
mRNA
_5288
mRNA
_5289
mRNA
_5290
13654
13655
13656
13657
13658
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
+0.1
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.3
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.2
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.0
-0.3
+0.2
growth on ypd
YPD
-0.3
N.D.
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.1
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.8
+0.2
-0.1
auxotrophy
Dropout Complete
-0.3
N.D.
+0.4
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.3
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.5
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.4
+0.1
+0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.3
+0.4
-0.0
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.3
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.4
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.5
+0.7
-0.0
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