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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13656 and 13657 are separated by 103 nucleotides
13657 and 13658 are separated by 421 nucleotides
13658 and 13659 are separated by 397 nucleotides
13659 and 13660 are separated by 624 nucleotides
mRNA_5288: 13656 - HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785, at 362,943 to 363,833
13656
mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363,937 to 365,504
13657
mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365,926 to 369,880
13658
mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370,278 to 371,436
13659
mRNA_5292: 13660 - Hypothetical Protein, at 372,061 to 373,005
13660
Group
Condition
mRNA
_5288
mRNA
_5289
mRNA
_5290
mRNA
_5291
mRNA
_5292
13656
13657
13658
13659
13660
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-0.2
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.0
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.1
-0.1
+0.2
growth on ypd
YPD
+0.2
+0.2
+0.1
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
+0.6
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.0
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
+0.3
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
+0.0
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
+0.2
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
+0.4
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.2
+0.2
-0.2
auxotrophy
Dropout Complete
+0.4
+0.4
-0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.1
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.2
-0.1
-0.3
+0.1
auxotrophy
YNB Glucose
+0.3
+0.4
-0.0
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.5
-0.1
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.7
-0.0
+0.0
-0.0
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