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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13657 and 13658 are separated by 421 nucleotides
13658 and 13659 are separated by 397 nucleotides
13659 and 13660 are separated by 624 nucleotides
13660 and 13661 are separated by 493 nucleotides
mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363,937 to 365,504
13657
mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365,926 to 369,880
13658
mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370,278 to 371,436
13659
mRNA_5292: 13660 - Hypothetical Protein, at 372,061 to 373,005
13660
mRNA_5293: 13661 - Hypothetical Protein, at 373,499 to 378,247
13661
Group
Condition
mRNA
_5289
mRNA
_5290
mRNA
_5291
mRNA
_5292
mRNA
_5293
13657
13658
13659
13660
13661
growth on ypd
YPD
+0.2
+0.1
-0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.0
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
+0.0
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.3
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
+0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
+0.3
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.3
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.2
+0.0
+0.2
auxotrophy
Dropout Complete
+0.4
-0.1
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
+0.3
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.4
-0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.6
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
+0.3
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose
+0.4
-0.0
+0.2
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.2
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.0
+0.0
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
+0.4
-0.0
+0.0
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