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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13658 and 13659 are separated by 397 nucleotides
13659 and 13660 are separated by 624 nucleotides
13660 and 13661 are separated by 493 nucleotides
13661 and 13662 are separated by 376 nucleotides
mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365,926 to 369,880
13658
mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370,278 to 371,436
13659
mRNA_5292: 13660 - Hypothetical Protein, at 372,061 to 373,005
13660
mRNA_5293: 13661 - Hypothetical Protein, at 373,499 to 378,247
13661
mRNA_5294: 13662 - K02830 HRAD1, RAD17 cell cycle checkpoint protein, at 378,624 to 380,568
13662
Group
Condition
mRNA
_5290
mRNA
_5291
mRNA
_5292
mRNA
_5293
mRNA
_5294
13658
13659
13660
13661
13662
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.3
-0.2
+0.1
-4.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
-0.3
+0.2
-1.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.6
+0.2
-0.0
-2.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
-0.0
-0.0
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.3
-0.0
-1.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.2
-0.1
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.0
+0.2
-0.2
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.2
+0.2
-1.2
growth on ypd
YPD
+0.1
-0.2
-0.3
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
+0.1
-0.2
-0.6
auxotrophy
Dropout Complete
-0.1
+0.1
-0.1
-0.0
-0.5
auxotrophy
YNB Glucose
-0.0
+0.2
-0.2
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
-0.0
+0.0
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
+0.0
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.0
-0.1
-0.8
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.0
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.1
+0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
+0.1
+0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.3
+0.1
+0.0
+0.6
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