Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13667 and 13668 are separated by 550 nucleotides13668 and 13669 are separated by 190 nucleotides13669 and 13670 are separated by 558 nucleotides13670 and 13671 are separated by 1293 nucleotides mRNA_5299: 13667 - BLAST RNA polymerase sigma factor, sigma-70 family [Rho..., at 388,361 to 391,277 13667 mRNA_5300: 13668 - K03023 RPC3, POLR3C DNA-directed RNA polymerase III subunit RPC3, at 391,828 to 394,452 13668 mRNA_5301: 13669 - K13950 pabAB para-aminobenzoate synthetase, at 394,643 to 397,418 13669 mRNA_5302: 13670 - K08711 ABCG2.PDR, CDR1 ATP-binding cassette, subfamily G (WHITE), member 2, PDR, at 397,977 to 403,896 13670 mRNA_5303: 13671 - K17608 STRN1_3_4 striatin 1/3/4, at 405,190 to 408,801 13671
Group Condition mRNA_5299 mRNA_5300 mRNA_5301 mRNA_5302 mRNA_5303
13667 13668 13669 13670 13671
ypd buoyancy 40 hrs High Buoyancy -0.5 N.D. -0.2 -0.1 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 N.D. -0.1 -0.4 -0.5
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 N.D. -0.0 -0.1 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 N.D. +0.1 +0.1 -0.5
growth on ypd YPD -0.1 N.D. -0.2 -0.1 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. -0.2 -0.1 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 N.D. -0.1 +0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.3 N.D. -0.2 -0.1 +0.5
facs on lipid accumulation Sorted No BODIPY Gate +0.2 N.D. +0.1 -0.1 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. +0.2 -0.1 -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.2 N.D. -0.1 +0.2 +0.2
auxotrophy YNB Glucose 75mM Methionine -0.1 N.D. -0.1 -0.2 +0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. +0.1 +0.1 -0.1
auxotrophy YNB Glucose -0.3 N.D. +0.0 -0.2 +0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -0.1 -0.0 +0.7
growth on ricinoleic acid YNB Glucose -0.2 N.D. +0.0 +0.1 +0.5
growth on oleic acid YNB Glucose +0.1 N.D. +0.0 -0.1 +0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 N.D. -0.2 +0.0 +0.8
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 N.D. +0.1 +0.1 +0.3
auxotrophy Dropout Complete -0.1 N.D. +0.0 +0.0 +0.7
growth on oleic acid YNB Oleic Acid +0.4 N.D. +0.1 -0.1 +0.7
remove
mRNA_5299
plot
remove
mRNA_5300
plot
remove
mRNA_5301
remove
mRNA_5302
plot
remove
mRNA_5303
plot