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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13667 and 13668 are separated by 550 nucleotides
13668 and 13669 are separated by 190 nucleotides
13669 and 13670 are separated by 558 nucleotides
13670 and 13671 are separated by 1293 nucleotides
mRNA_5299: 13667 - BLAST RNA polymerase sigma factor, sigma-70 family [Rho..., at 388,361 to 391,277
13667
mRNA_5300: 13668 - K03023 RPC3, POLR3C DNA-directed RNA polymerase III subunit RPC3, at 391,828 to 394,452
13668
mRNA_5301: 13669 - K13950 pabAB para-aminobenzoate synthetase, at 394,643 to 397,418
13669
mRNA_5302: 13670 - K08711 ABCG2.PDR, CDR1 ATP-binding cassette, subfamily G (WHITE), member 2, PDR, at 397,977 to 403,896
13670
mRNA_5303: 13671 - K17608 STRN1_3_4 striatin 1/3/4, at 405,190 to 408,801
13671
Group
Condition
mRNA
_5299
mRNA
_5300
mRNA
_5301
mRNA
_5302
mRNA
_5303
13667
13668
13669
13670
13671
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.1
-0.4
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
+0.1
-0.5
growth on ypd
YPD
-0.1
N.D.
-0.2
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.2
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
-0.3
N.D.
+0.0
-0.2
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
-0.0
+0.7
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.0
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-0.2
+0.0
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+0.1
+0.1
+0.3
auxotrophy
Dropout Complete
-0.1
N.D.
+0.0
+0.0
+0.7
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.1
-0.1
+0.7
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