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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13672 and 13673 are separated by 479 nucleotides
13673 and 13674 are separated by 267 nucleotides
13674 and 13675 are separated by 158 nucleotides
13675 and 13676 are separated by 116 nucleotides
mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409,088 to 413,869
13672
mRNA_5305: 13673 - K14859 SSF1_2 ribosome biogenesis protein SSF1/2, at 414,349 to 416,763
13673
mRNA_5306: 13674 - BLAST PQ-loop repeat protein [Colletotrichum tofieldiae], at 417,031 to 419,663
13674
mRNA_5307: 13675 - KOG3769 Ribonuclease III domain proteins, at 419,822 to 421,852
13675
mRNA_5308: 13676 - Hypothetical Protein, at 421,969 to 422,926
13676
Group
Condition
mRNA
_5304
mRNA
_5305
mRNA
_5306
mRNA
_5307
mRNA
_5308
13672
13673
13674
13675
13676
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.1
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.6
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.1
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
-0.0
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.6
-0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.2
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+0.1
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
-0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.4
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.4
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
N.D.
+0.0
auxotrophy
Dropout Complete
+0.2
-0.5
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose
+0.1
-0.2
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.0
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
+0.2
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.9
+0.3
N.D.
-0.1
growth on ypd
YPD
+0.4
+1.1
-0.0
N.D.
+0.1
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