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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13674 and 13675 are separated by 158 nucleotides
13675 and 13676 are separated by 116 nucleotides
13676 and 13677 are separated by 222 nucleotides
13677 and 13678 are separated by 410 nucleotides
mRNA_5306: 13674 - BLAST PQ-loop repeat protein [Colletotrichum tofieldiae], at 417,031 to 419,663
13674
mRNA_5307: 13675 - KOG3769 Ribonuclease III domain proteins, at 419,822 to 421,852
13675
mRNA_5308: 13676 - Hypothetical Protein, at 421,969 to 422,926
13676
mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423,149 to 425,154
13677
mRNA_5310: 13678 - Hypothetical Protein, at 425,565 to 427,309
13678
Group
Condition
mRNA
_5306
mRNA
_5307
mRNA
_5308
mRNA
_5309
mRNA
_5310
13674
13675
13676
13677
13678
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.8
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
-0.5
-0.1
+0.0
auxotrophy
YNB Glucose
+0.2
N.D.
-0.2
-0.7
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.6
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.3
-0.5
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
-0.3
-0.1
growth on oleic acid
YNB Glucose
-0.4
N.D.
-0.0
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.7
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.3
-0.7
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.4
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.4
-0.6
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.2
-0.4
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.1
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.2
-0.5
+0.2
growth on ypd
YPD
-0.0
N.D.
+0.1
-0.3
+0.3
auxotrophy
Dropout Complete
+0.3
N.D.
-0.1
-0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.0
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.1
+0.8
+0.2
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