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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13677 and 13678 are separated by 410 nucleotides
13678 and 13679 are separated by 303 nucleotides
13679 and 13680 are separated by 484 nucleotides
13680 and 13681 are separated by 450 nucleotides
mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423,149 to 425,154
13677
mRNA_5310: 13678 - Hypothetical Protein, at 425,565 to 427,309
13678
mRNA_5311: 13679 - Hypothetical Protein, at 427,613 to 428,578
13679
mRNA_5312: 13680 - K18182 COX16 cytochrome c oxidase assembly protein subunit 16, at 429,063 to 429,953
13680
mRNA_5313: 13681 - KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15, at 430,404 to 433,324
13681
Group
Condition
mRNA
_5309
mRNA
_5310
mRNA
_5311
mRNA
_5312
mRNA
_5313
13677
13678
13679
13680
13681
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.0
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.2
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
+0.0
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.0
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose
-0.7
+0.0
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
-0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.4
+0.1
+0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.4
+0.3
N.D.
-0.3
growth on ypd
YPD
-0.3
+0.3
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.6
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.4
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
-0.5
+0.3
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.2
-0.0
N.D.
+0.3
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