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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13690 and 13691 are separated by 373 nucleotides
13691 and 13692 are separated by 140 nucleotides
13692 and 13693 are separated by 483 nucleotides
13693 and 13694 are separated by 288 nucleotides
mRNA_5322: 13690 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 452,870 to 455,692
13690
mRNA_5323: 13691 - K10842 MNAT1 CDK-activating kinase assembly factor MAT1, at 456,066 to 457,717
13691
mRNA_5324: 13692 - KOG2852 Possible oxidoreductase, at 457,858 to 459,287
13692
mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459,771 to 461,459
13693
mRNA_5326: 13694 - K00020 mmsB, HIBADH 3-hydroxyisobutyrate dehydrogenase, at 461,748 to 463,259
13694
Group
Condition
mRNA
_5322
mRNA
_5323
mRNA
_5324
mRNA
_5325
mRNA
_5326
13690
13691
13692
13693
13694
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.3
-0.6
-0.4
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.3
-0.5
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
-0.4
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.2
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
+0.2
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.3
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
+0.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
+0.0
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
+0.3
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.5
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.5
+0.4
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.1
+0.0
-0.2
growth on ypd
YPD
-0.3
N.D.
+0.3
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
+0.0
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose
+0.2
N.D.
-0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.2
N.D.
+0.0
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.6
+0.4
-0.2
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