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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13691 and 13692 are separated by 140 nucleotides
13692 and 13693 are separated by 483 nucleotides
13693 and 13694 are separated by 288 nucleotides
13694 and 13695 are separated by 251 nucleotides
mRNA_5323: 13691 - K10842 MNAT1 CDK-activating kinase assembly factor MAT1, at 456,066 to 457,717
13691
mRNA_5324: 13692 - KOG2852 Possible oxidoreductase, at 457,858 to 459,287
13692
mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459,771 to 461,459
13693
mRNA_5326: 13694 - K00020 mmsB, HIBADH 3-hydroxyisobutyrate dehydrogenase, at 461,748 to 463,259
13694
mRNA_5327: 13695 - Hypothetical Protein, at 463,511 to 464,845
13695
Group
Condition
mRNA
_5323
mRNA
_5324
mRNA
_5325
mRNA
_5326
mRNA
_5327
13691
13692
13693
13694
13695
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
-0.2
-2.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.0
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
+0.4
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
+0.3
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.6
-0.4
+0.7
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.5
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.4
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.2
-0.4
+0.4
auxotrophy
YNB Glucose
N.D.
-0.1
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.1
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.3
-0.1
-0.5
auxotrophy
Dropout Complete
N.D.
+0.0
+0.2
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.1
+0.2
-0.3
growth on ypd
YPD
N.D.
+0.3
-0.2
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.1
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.0
-0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
+0.4
-0.2
-0.2
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