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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13692 and 13693 are separated by 483 nucleotides
13693 and 13694 are separated by 288 nucleotides
13694 and 13695 are separated by 251 nucleotides
13695 and 13696 are separated by 762 nucleotides
mRNA_5324: 13692 - KOG2852 Possible oxidoreductase, at 457,858 to 459,287
13692
mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459,771 to 461,459
13693
mRNA_5326: 13694 - K00020 mmsB, HIBADH 3-hydroxyisobutyrate dehydrogenase, at 461,748 to 463,259
13694
mRNA_5327: 13695 - Hypothetical Protein, at 463,511 to 464,845
13695
mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465,608 to 466,886
13696
Group
Condition
mRNA
_5324
mRNA
_5325
mRNA
_5326
mRNA
_5327
mRNA
_5328
13692
13693
13694
13695
13696
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
-0.4
+0.7
-1.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.2
-2.0
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
-0.1
-0.8
-0.0
auxotrophy
YNB Glucose
-0.1
+0.3
-0.1
-0.3
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.4
+0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.4
+0.0
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.3
-0.3
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.4
-0.4
-0.4
+0.3
auxotrophy
Dropout Complete
+0.0
+0.2
-0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-0.2
+0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.2
-0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
-0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
-0.0
-0.0
growth on oleic acid
YNB Glucose
-0.3
-0.5
-0.1
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
-0.1
+0.6
-0.3
growth on ypd
YPD
+0.3
-0.2
-0.0
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.2
-0.2
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
-0.1
-0.5
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.0
-0.2
+0.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
+0.4
-0.2
-0.2
+0.3
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