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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13696 and 13697 are separated by 148 nucleotides
13697 and 13698 are separated by 1407 nucleotides
13698 and 13699 are separated by 486 nucleotides
13699 and 13700 are separated by 133 nucleotides
mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465,608 to 466,886
13696
mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467,035 to 469,864
13697
mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471,272 to 473,464
13698
mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473,951 to 475,290
13699
mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475,424 to 477,955
13700
Group
Condition
mRNA
_5328
mRNA
_5329
mRNA
_5330
mRNA
_5331
mRNA
_5332
13696
13697
13698
13699
13700
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.4
-0.1
+0.4
-0.3
-0.2
growth on ypd
YPD
+0.1
-0.4
-0.4
-0.5
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.4
-0.5
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.8
-0.2
-0.0
-0.1
auxotrophy
Dropout Complete
-0.3
-0.2
-0.3
-0.0
-0.3
auxotrophy
YNB Glucose
-0.7
+0.0
-0.0
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
-0.1
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.0
+0.4
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.4
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
+0.0
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
+0.1
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.7
+0.0
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+1.0
+0.0
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
+0.1
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.1
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.1
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.0
+0.3
+0.3
+0.2
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