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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13697 and 13698 are separated by 1407 nucleotides
13698 and 13699 are separated by 486 nucleotides
13699 and 13700 are separated by 133 nucleotides
13700 and 13701 are separated by 235 nucleotides
mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467,035 to 469,864
13697
mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471,272 to 473,464
13698
mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473,951 to 475,290
13699
mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475,424 to 477,955
13700
mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250
13701
Group
Condition
mRNA
_5329
mRNA
_5330
mRNA
_5331
mRNA
_5332
mRNA
_5333
13697
13698
13699
13700
13701
growth on ypd
YPD
-0.4
-0.4
-0.5
-0.3
-0.1
auxotrophy
Dropout Complete
-0.2
-0.3
-0.0
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.2
-0.0
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.5
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.2
-0.2
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.3
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.4
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
-0.3
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.1
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
-0.3
+0.1
+0.3
auxotrophy
YNB Glucose
+0.0
-0.0
-0.0
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.2
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.4
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.0
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
-0.3
+0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.0
-0.0
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.3
+0.2
-0.1
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