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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13698 and 13699 are separated by 486 nucleotides
13699 and 13700 are separated by 133 nucleotides
13700 and 13701 are separated by 235 nucleotides
13701 and 13702 are separated by 246 nucleotides
mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471,272 to 473,464
13698
mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473,951 to 475,290
13699
mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475,424 to 477,955
13700
mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250
13701
mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330
13702
Group
Condition
mRNA
_5330
mRNA
_5331
mRNA
_5332
mRNA
_5333
mRNA
_5334
13698
13699
13700
13701
13702
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
-0.1
-0.2
-1.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.0
-0.3
-1.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.2
-0.1
-1.2
auxotrophy
Dropout Complete
-0.3
-0.0
-0.3
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.3
-0.2
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.0
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.0
-0.3
-0.1
-0.5
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
-0.1
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.3
+0.5
-0.3
auxotrophy
YNB Glucose
-0.0
-0.0
-0.3
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
-0.1
+0.2
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
-0.1
-0.4
+0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.1
-0.0
+0.2
growth on ypd
YPD
-0.4
-0.5
-0.3
-0.1
+1.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.2
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.4
+0.4
-0.0
+1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.1
+0.3
+1.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.2
+0.0
+2.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.3
+0.0
+2.1
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