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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13699 and 13700 are separated by 133 nucleotides
13700 and 13701 are separated by 235 nucleotides
13701 and 13702 are separated by 246 nucleotides
13702 and 13703 are separated by 299 nucleotides
mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473,951 to 475,290
13699
mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475,424 to 477,955
13700
mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250
13701
mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330
13702
mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657
13703
Group
Condition
mRNA
_5331
mRNA
_5332
mRNA
_5333
mRNA
_5334
mRNA
_5335
13699
13700
13701
13702
13703
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.3
-1.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.1
-1.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
-0.0
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.2
-1.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
-0.1
-0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.1
-0.5
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.0
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.3
-0.3
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.1
+0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
-0.4
+0.6
+0.2
auxotrophy
Dropout Complete
-0.0
-0.3
-0.1
-0.2
+1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
+0.5
-0.3
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.1
-0.4
+0.5
growth on ypd
YPD
-0.5
-0.3
-0.1
+1.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.3
+1.7
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.2
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.4
-0.0
+1.7
-0.6
auxotrophy
YNB Glucose
-0.0
-0.3
+0.3
-0.0
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
+0.0
+2.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
+0.0
+2.1
-0.1
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