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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13701 and 13702 are separated by 246 nucleotides
13702 and 13703 are separated by 299 nucleotides
13703 and 13704 are separated by 279 nucleotides
13704 and 13705 are separated by 215 nucleotides
mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250
13701
mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330
13702
mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657
13703
mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482,937 to 484,688
13704
mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484,904 to 487,998
13705
Group
Condition
mRNA
_5333
mRNA
_5334
mRNA
_5335
mRNA
_5336
mRNA
_5337
13701
13702
13703
13704
13705
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-1.2
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-1.1
-0.5
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-1.2
+0.5
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.4
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.6
+0.2
N.D.
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
+0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.2
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
+0.6
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
+0.4
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.5
N.D.
+0.1
auxotrophy
Dropout Complete
-0.1
-0.2
+1.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+1.7
-0.6
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.7
-0.9
N.D.
-0.1
growth on ypd
YPD
-0.1
+1.5
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose
+0.3
-0.0
+1.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+2.0
-0.5
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+2.1
-0.1
N.D.
-0.2
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