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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13706 and 13707 are separated by 153 nucleotides
13707 and 13708 are separated by 178 nucleotides
13708 and 13709 are separated by 646 nucleotides
13709 and 13710 are separated by 237 nucleotides
mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488,482 to 491,424
13706
mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491,578 to 492,823
13707
mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493,002 to 494,592
13708
mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495,239 to 496,655
13709
mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496,893 to 498,783
13710
Group
Condition
mRNA
_5338
mRNA
_5339
mRNA
_5340
mRNA
_5341
mRNA
_5342
13706
13707
13708
13709
13710
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
N.D.
+0.2
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
N.D.
+0.1
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
N.D.
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
N.D.
-0.2
+0.1
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.2
-0.7
-0.4
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.0
+0.0
-0.2
growth on ypd
YPD
-0.0
N.D.
-0.5
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.3
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.0
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
N.D.
+0.1
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
-0.1
-0.4
auxotrophy
YNB Glucose
-0.4
N.D.
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.3
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.0
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.2
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.1
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.2
-0.2
+0.3
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