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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13707 and 13708 are separated by 178 nucleotides
13708 and 13709 are separated by 646 nucleotides
13709 and 13710 are separated by 237 nucleotides
13710 and 13711 are separated by 833 nucleotides
mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491,578 to 492,823
13707
mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493,002 to 494,592
13708
mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495,239 to 496,655
13709
mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496,893 to 498,783
13710
mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499,617 to 502,031
13711
Group
Condition
mRNA
_5339
mRNA
_5340
mRNA
_5341
mRNA
_5342
mRNA
_5343
13707
13708
13709
13710
13711
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.7
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.5
-0.3
-0.1
growth on ypd
YPD
N.D.
-0.5
-0.0
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.4
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.1
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.1
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.0
-0.0
+0.1
auxotrophy
Dropout Complete
N.D.
-0.1
+0.0
-0.0
+0.3
auxotrophy
YNB Glucose
N.D.
-0.1
-0.1
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.0
-0.2
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.0
-0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.1
+0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.0
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.2
+0.3
+0.4
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