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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13708 and 13709 are separated by 646 nucleotides
13709 and 13710 are separated by 237 nucleotides
13710 and 13711 are separated by 833 nucleotides
13711 and 13712 are separated by 37 nucleotides
mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493,002 to 494,592
13708
mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495,239 to 496,655
13709
mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496,893 to 498,783
13710
mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499,617 to 502,031
13711
mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502,069 to 503,147
13712
Group
Condition
mRNA
_5340
mRNA
_5341
mRNA
_5342
mRNA
_5343
mRNA
_5344
13708
13709
13710
13711
13712
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
-0.4
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.2
-0.1
-0.3
growth on ypd
YPD
-0.5
-0.0
+0.0
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.0
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.5
-0.3
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.4
-0.1
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.1
+0.3
+0.2
auxotrophy
Dropout Complete
-0.1
+0.0
-0.0
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
-0.0
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
-0.0
-0.1
+0.6
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.1
+0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
+0.3
+0.4
-0.2
growth on oleic acid
YNB Glucose
+0.0
+0.0
-0.2
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.4
-0.1
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.2
+0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.5
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.3
+0.3
+0.1
auxotrophy
YNB Glucose
-0.1
-0.1
+0.2
+0.3
+0.5
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