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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13710 and 13711 are separated by 833 nucleotides
13711 and 13712 are separated by 37 nucleotides
13712 and 13713 are separated by 223 nucleotides
13713 and 13714 are separated by 233 nucleotides
mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496,893 to 498,783
13710
mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499,617 to 502,031
13711
mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502,069 to 503,147
13712
mRNA_5345: 13713 - Hypothetical Protein, at 503,371 to 504,560
13713
mRNA_5346: 13714 - HMMPfam-Hamartin protein-PF04388, at 504,794 to 508,994
13714
Group
Condition
mRNA
_5342
mRNA
_5343
mRNA
_5344
mRNA
_5345
mRNA
_5346
13710
13711
13712
13713
13714
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.3
N.D.
-0.1
growth on ypd
YPD
+0.0
-0.0
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
+0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.6
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
+0.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.4
N.D.
-0.1
auxotrophy
Dropout Complete
-0.0
+0.3
+0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.3
+0.4
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.5
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
+1.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.6
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.3
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.3
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.2
+0.3
+0.5
N.D.
+0.1
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