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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13711 and 13712 are separated by 37 nucleotides
13712 and 13713 are separated by 223 nucleotides
13713 and 13714 are separated by 233 nucleotides
13714 and 13715 are separated by 889 nucleotides
mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499,617 to 502,031
13711
mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502,069 to 503,147
13712
mRNA_5345: 13713 - Hypothetical Protein, at 503,371 to 504,560
13713
mRNA_5346: 13714 - HMMPfam-Hamartin protein-PF04388, at 504,794 to 508,994
13714
mRNA_5347: 13715 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 509,884 to 511,420
13715
Group
Condition
mRNA
_5343
mRNA
_5344
mRNA
_5345
mRNA
_5346
mRNA
_5347
13711
13712
13713
13714
13715
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
-0.1
-0.2
growth on ypd
YPD
-0.0
+0.0
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.2
N.D.
+0.0
-0.2
auxotrophy
Dropout Complete
+0.3
+0.0
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.6
N.D.
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
N.D.
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose
+0.3
+0.5
N.D.
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.5
+0.2
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.0
N.D.
+0.1
-0.0
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