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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13713 and 13714 are separated by 233 nucleotides
13714 and 13715 are separated by 889 nucleotides
13715 and 13716 are separated by 1119 nucleotides
13716 and 13717 are separated by 133 nucleotides
mRNA_5345: 13713 - Hypothetical Protein, at 503,371 to 504,560
13713
mRNA_5346: 13714 - HMMPfam-Hamartin protein-PF04388, at 504,794 to 508,994
13714
mRNA_5347: 13715 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 509,884 to 511,420
13715
mRNA_5348: 13716 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 512,540 to 514,284
13716
mRNA_5349: 13717 - K17427 MRPL46 large subunit ribosomal protein L46, at 514,418 to 515,269
13717
Group
Condition
mRNA
_5345
mRNA
_5346
mRNA
_5347
mRNA
_5348
mRNA
_5349
13713
13714
13715
13716
13717
growth on ypd
YPD
N.D.
-0.2
-0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.4
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.2
+0.1
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
-0.3
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.0
+0.0
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.4
+0.3
N.D.
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