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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13717 and 13718 are separated by 444 nucleotides
13718 and 13719 are separated by 751 nucleotides
13719 and 13720 are separated by 2414 nucleotides
13720 and 13721 are separated by 754 nucleotides
mRNA_5349: 13717 - K17427 MRPL46 large subunit ribosomal protein L46, at 514,418 to 515,269
13717
mRNA_5350: 13718 - K20310 TRAPPC13 trafficking protein particle complex subunit 13, at 515,714 to 517,641
13718
mRNA_5351: 13719 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 518,393 to 520,382
13719
mRNA_5352: 13720 - KOG1674 Cyclin, at 522,797 to 523,590
13720
mRNA_5353: 13721 - Hypothetical Protein, at 524,345 to 526,185
13721
Group
Condition
mRNA
_5349
mRNA
_5350
mRNA
_5351
mRNA
_5352
mRNA
_5353
13717
13718
13719
13720
13721
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.0
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose
N.D.
+0.0
-0.2
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.1
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.2
N.D.
-0.2
auxotrophy
Dropout Complete
N.D.
+0.4
-0.3
N.D.
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.2
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.0
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.1
N.D.
+0.4
growth on ypd
YPD
N.D.
+0.3
+0.4
N.D.
+0.7
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