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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13718 and 13719 are separated by 751 nucleotides
13719 and 13720 are separated by 2414 nucleotides
13720 and 13721 are separated by 754 nucleotides
13721 and 13722 are separated by 1024 nucleotides
mRNA_5350: 13718 - K20310 TRAPPC13 trafficking protein particle complex subunit 13, at 515,714 to 517,641
13718
mRNA_5351: 13719 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 518,393 to 520,382
13719
mRNA_5352: 13720 - KOG1674 Cyclin, at 522,797 to 523,590
13720
mRNA_5353: 13721 - Hypothetical Protein, at 524,345 to 526,185
13721
mRNA_5354: 13722 - KOG0557 Dihydrolipoamide acetyltransferase, at 527,210 to 528,729
13722
Group
Condition
mRNA
_5350
mRNA
_5351
mRNA
_5352
mRNA
_5353
mRNA
_5354
13718
13719
13720
13721
13722
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.2
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
N.D.
-0.5
-1.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
N.D.
-0.0
-1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.0
N.D.
-0.4
-0.1
auxotrophy
Dropout Complete
+0.4
-0.3
N.D.
-0.6
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
N.D.
-0.1
-0.7
auxotrophy
YNB Glucose
+0.0
-0.2
N.D.
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
N.D.
+0.1
-0.9
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
N.D.
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
N.D.
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
-0.3
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.3
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.4
N.D.
+0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.1
+1.2
growth on ypd
YPD
+0.3
+0.4
N.D.
+0.7
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
N.D.
+0.4
+1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
-0.3
+2.4
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