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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13719 and 13720 are separated by 2414 nucleotides
13720 and 13721 are separated by 754 nucleotides
13721 and 13722 are separated by 1024 nucleotides
13722 and 13723 are separated by 240 nucleotides
mRNA_5351: 13719 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 518,393 to 520,382
13719
mRNA_5352: 13720 - KOG1674 Cyclin, at 522,797 to 523,590
13720
mRNA_5353: 13721 - Hypothetical Protein, at 524,345 to 526,185
13721
mRNA_5354: 13722 - KOG0557 Dihydrolipoamide acetyltransferase, at 527,210 to 528,729
13722
mRNA_5355: 13723 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 528,970 to 530,546
13723
Group
Condition
mRNA
_5351
mRNA
_5352
mRNA
_5353
mRNA
_5354
mRNA
_5355
13719
13720
13721
13722
13723
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.2
-1.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.5
-1.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.0
-1.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
-0.1
-0.7
-0.2
auxotrophy
Dropout Complete
-0.3
N.D.
-0.6
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.3
-0.3
+0.5
auxotrophy
YNB Glucose
-0.2
N.D.
-0.4
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.4
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.1
-0.9
+1.0
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.2
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.2
+0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.3
+0.9
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.3
+0.7
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.3
+0.4
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.4
+1.3
-0.6
growth on ypd
YPD
+0.4
N.D.
+0.7
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
+1.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.3
+2.4
+0.1
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