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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13724 and 13725 are separated by 153 nucleotides
13725 and 13726 are separated by 307 nucleotides
13726 and 13727 are separated by 314 nucleotides
13727 and 13728 are separated by 537 nucleotides
mRNA_5356: 13724 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 531,177 to 533,794
13724
mRNA_5357: 13725 - HMMPfam-Methyltransferase domain-PF12847,SUPERFAMILY--SSF53335, at 533,948 to 534,977
13725
mRNA_5358: 13726 - Hypothetical Protein, at 535,285 to 536,423
13726
mRNA_5359: 13727 - KOG0254 Predicted transporter (major facilitator superfamily), at 536,738 to 538,804
13727
mRNA_5360: 13728 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 539,342 to 540,520
13728
Group
Condition
mRNA
_5356
mRNA
_5357
mRNA
_5358
mRNA
_5359
mRNA
_5360
13724
13725
13726
13727
13728
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
N.D.
-0.8
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
N.D.
-0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
N.D.
-0.6
+0.3
auxotrophy
Dropout Complete
-0.1
+0.1
N.D.
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose
-0.0
-0.3
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.6
N.D.
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.5
N.D.
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.5
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
N.D.
+0.4
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.1
N.D.
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
N.D.
+0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
N.D.
+0.6
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
N.D.
+0.2
+0.2
growth on ypd
YPD
-0.1
+0.5
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
N.D.
+0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.3
N.D.
+1.7
-0.6
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