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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13727 and 13728 are separated by 537 nucleotides
13728 and 13729 are separated by 539 nucleotides
13729 and 13730 are separated by 265 nucleotides
13730 and 13731 are separated by 295 nucleotides
mRNA_5359: 13727 - KOG0254 Predicted transporter (major facilitator superfamily), at 536,738 to 538,804
13727
mRNA_5360: 13728 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 539,342 to 540,520
13728
mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541,060 to 542,859
13729
mRNA_5362: 13730 - Hypothetical Protein, at 543,125 to 544,034
13730
mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544,330 to 546,394
13731
Group
Condition
mRNA
_5359
mRNA
_5360
mRNA
_5361
mRNA
_5362
mRNA
_5363
13727
13728
13729
13730
13731
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.3
N.D.
+0.1
-1.5
ypd buoyancy
40 hrs No Buoyancy Separation
+1.7
-0.6
N.D.
-0.9
-2.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
N.D.
+0.0
-1.5
growth on ypd
YPD
+0.3
-0.0
N.D.
-0.2
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.4
N.D.
+0.1
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.4
N.D.
+0.0
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.3
N.D.
+0.0
-0.9
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
N.D.
-0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
-0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.2
N.D.
+0.1
-0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
N.D.
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
N.D.
-0.0
-0.5
auxotrophy
Dropout Complete
-0.3
-0.0
N.D.
+0.0
+0.5
growth on oleic acid
YNB Glucose
+0.4
+0.1
N.D.
-0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.1
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
N.D.
-0.0
+1.1
auxotrophy
YNB Glucose
-0.1
+0.4
N.D.
-0.1
+1.3
growth on ricinoleic acid
YNB Glucose
+0.6
+0.3
N.D.
-0.1
+1.7
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