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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13728 and 13729 are separated by 539 nucleotides
13729 and 13730 are separated by 265 nucleotides
13730 and 13731 are separated by 295 nucleotides
13731 and 13732 are separated by 290 nucleotides
mRNA_5360: 13728 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 539,342 to 540,520
13728
mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541,060 to 542,859
13729
mRNA_5362: 13730 - Hypothetical Protein, at 543,125 to 544,034
13730
mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544,330 to 546,394
13731
mRNA_5364: 13732 - KOG1630 Growth hormone-induced protein and related proteins, at 546,685 to 547,952
13732
Group
Condition
mRNA
_5360
mRNA
_5361
mRNA
_5362
mRNA
_5363
mRNA
_5364
13728
13729
13730
13731
13732
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.9
-2.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
-1.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.0
-1.5
+0.1
growth on ypd
YPD
-0.0
N.D.
-0.2
-1.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
+0.0
-0.8
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.1
-0.7
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.1
-1.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.2
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
-0.9
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
+0.0
-0.9
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.0
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.0
-0.3
-0.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.0
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.2
+0.2
+0.0
auxotrophy
Dropout Complete
-0.0
N.D.
+0.0
+0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.0
+1.1
-0.2
auxotrophy
YNB Glucose
+0.4
N.D.
-0.1
+1.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.1
+1.7
-0.2
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