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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13729 and 13730 are separated by 265 nucleotides
13730 and 13731 are separated by 295 nucleotides
13731 and 13732 are separated by 290 nucleotides
13732 and 13733 are separated by 448 nucleotides
mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541,060 to 542,859
13729
mRNA_5362: 13730 - Hypothetical Protein, at 543,125 to 544,034
13730
mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544,330 to 546,394
13731
mRNA_5364: 13732 - KOG1630 Growth hormone-induced protein and related proteins, at 546,685 to 547,952
13732
mRNA_5365: 13733 - K00107 ALO D-arabinono-1,4-lactone oxidase, at 548,401 to 550,040
13733
Group
Condition
mRNA
_5361
mRNA
_5362
mRNA
_5363
mRNA
_5364
mRNA
_5365
13729
13730
13731
13732
13733
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.9
-2.0
-0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-1.5
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
-1.5
+0.1
-0.1
growth on ypd
YPD
N.D.
-0.2
-1.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-1.4
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.7
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.7
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
-0.9
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.8
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.3
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.5
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.9
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.4
-0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.2
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-0.0
+0.0
auxotrophy
Dropout Complete
N.D.
+0.0
+0.5
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+1.1
-0.2
-0.0
auxotrophy
YNB Glucose
N.D.
-0.1
+1.3
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+1.7
-0.2
-0.2
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