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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13735 and 13736 are separated by 370 nucleotides
13736 and 13737 are separated by 518 nucleotides
13737 and 13738 are separated by 524 nucleotides
13738 and 13739 are separated by 313 nucleotides
mRNA_5367: 13735 - K08838 STK24_25_MST4 serine/threonine-protein kinase 24/25/MST4, at 552,284 to 555,242
13735
mRNA_5368: 13736 - K09553 STIP1 stress-induced-phosphoprotein 1, at 555,613 to 556,991
13736
mRNA_5369: 13737 - K03627 MBF1 putative transcription factor, at 557,510 to 559,067
13737
mRNA_5370: 13738 - K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1, at 559,592 to 565,388
13738
mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965
13739
Group
Condition
mRNA
_5367
mRNA
_5368
mRNA
_5369
mRNA
_5370
mRNA
_5371
13735
13736
13737
13738
13739
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.4
+0.1
-2.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
-0.0
-1.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.7
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.5
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
-0.2
-0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.4
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.3
-0.2
-0.7
N.D.
growth on ypd
YPD
-0.4
+0.3
+0.0
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
+0.0
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.3
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+1.7
-0.7
N.D.
auxotrophy
Dropout Complete
-0.2
+0.3
+1.5
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.1
+1.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+1.6
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+1.9
+0.5
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.9
+1.3
N.D.
auxotrophy
YNB Glucose
+0.1
+0.7
+1.2
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
-0.2
+2.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.7
+2.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
+1.3
+1.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.4
+0.6
+3.1
N.D.
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