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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13736 and 13737 are separated by 518 nucleotides
13737 and 13738 are separated by 524 nucleotides
13738 and 13739 are separated by 313 nucleotides
13739 and 13740 are separated by 416 nucleotides
mRNA_5368: 13736 - K09553 STIP1 stress-induced-phosphoprotein 1, at 555,613 to 556,991
13736
mRNA_5369: 13737 - K03627 MBF1 putative transcription factor, at 557,510 to 559,067
13737
mRNA_5370: 13738 - K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1, at 559,592 to 565,388
13738
mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965
13739
mRNA_5372: 13740 - K04487 iscS, NFS1 cysteine desulfurase, at 567,382 to 569,979
13740
Group
Condition
mRNA
_5368
mRNA
_5369
mRNA
_5370
mRNA
_5371
mRNA
_5372
13736
13737
13738
13739
13740
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.1
-2.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.0
-1.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.7
-0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.5
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.3
+0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+1.7
-0.7
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
+1.5
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
+1.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+2.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+1.6
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+1.9
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.9
+1.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.7
+1.2
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+2.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.3
+1.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.6
+3.1
N.D.
N.D.
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