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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13738 and 13739 are separated by 313 nucleotides
13739 and 13740 are separated by 416 nucleotides
13740 and 13741 are separated by 1083 nucleotides
13741 and 13742 are separated by 74 nucleotides
mRNA_5370: 13738 - K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1, at 559,592 to 565,388
13738
mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965
13739
mRNA_5372: 13740 - K04487 iscS, NFS1 cysteine desulfurase, at 567,382 to 569,979
13740
mRNA_5373: 13741 - Hypothetical Protein, at 571,063 to 571,885
13741
mRNA_5374: 13742 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 571,960 to 573,012
13742
Group
Condition
mRNA
_5370
mRNA
_5371
mRNA
_5372
mRNA
_5373
mRNA
_5374
13738
13739
13740
13741
13742
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
N.D.
-0.7
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
N.D.
N.D.
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
N.D.
N.D.
-0.2
+0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
-0.4
-0.7
auxotrophy
Dropout Complete
-0.5
N.D.
N.D.
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.7
N.D.
N.D.
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
N.D.
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose
+0.5
N.D.
N.D.
-0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
N.D.
N.D.
-0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
N.D.
+0.3
+0.2
growth on ypd
YPD
+0.1
N.D.
N.D.
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
N.D.
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+1.3
N.D.
N.D.
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.6
N.D.
N.D.
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+2.2
N.D.
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+3.1
N.D.
N.D.
-0.1
+0.2
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