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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13739 and 13740 are separated by 416 nucleotides
13740 and 13741 are separated by 1083 nucleotides
13741 and 13742 are separated by 74 nucleotides
13742 and 13743 are separated by 5336 nucleotides
mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965
13739
mRNA_5372: 13740 - K04487 iscS, NFS1 cysteine desulfurase, at 567,382 to 569,979
13740
mRNA_5373: 13741 - Hypothetical Protein, at 571,063 to 571,885
13741
mRNA_5374: 13742 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 571,960 to 573,012
13742
mRNA_5375: 13743 - Hypothetical Protein, at 578,349 to 578,853
13743
Group
Condition
mRNA
_5371
mRNA
_5372
mRNA
_5373
mRNA
_5374
mRNA
_5375
13739
13740
13741
13742
13743
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.7
-0.8
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.4
-0.7
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.4
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.5
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.4
-0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.2
+0.5
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
+0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.5
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
+0.1
+1.0
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