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Fitness for 4 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13762 and 13763 are separated by 73 nucleotides
13763 and 13764 are separated by 94 nucleotides
13764 and 13765 are separated by 337 nucleotides
mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074
13762
mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997
13763
mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2,092 to 5,786
13764
mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6,124 to 7,635
13765
Group
Condition
mRNA
_5394
mRNA
_5395
mRNA
_5396
mRNA
_5397
13762
13763
13764
13765
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.2
+0.3
auxotrophy
Dropout Complete
-0.1
-0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
-0.0
-0.0
auxotrophy
YNB Glucose
-0.1
-0.2
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.0
+0.3
growth on ypd
YPD
+0.1
+0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.3
+1.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.1
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
+0.0
+1.3
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