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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13763 and 13764 are separated by 94 nucleotides
13764 and 13765 are separated by 337 nucleotides
13765 and 13766 are separated by 441 nucleotides
13766 and 13767 are separated by 555 nucleotides
mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997
13763
mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2,092 to 5,786
13764
mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6,124 to 7,635
13765
mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8,077 to 11,128
13766
mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11,684 to 12,574
13767
Group
Condition
mRNA
_5395
mRNA
_5396
mRNA
_5397
mRNA
_5398
mRNA
_5399
13763
13764
13765
13766
13767
auxotrophy
YNB Glucose
-0.2
-0.3
+0.2
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
-0.6
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.1
-0.5
-0.2
auxotrophy
Dropout Complete
-0.2
-0.2
+0.1
-0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.1
-0.2
-0.5
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.5
-0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.4
-0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
+1.2
-0.6
-0.8
growth on ypd
YPD
+0.1
-0.1
-0.0
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.2
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
+0.3
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.1
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
-0.0
+0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.2
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.1
+0.1
+0.4
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.6
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
+1.3
-0.4
-0.6
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.7
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.0
+0.1
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
+0.3
+0.2
+1.0
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