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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13765 and 13766 are separated by 441 nucleotides
13766 and 13767 are separated by 555 nucleotides
13767 and 13768 are separated by 576 nucleotides
13768 and 13769 are separated by 244 nucleotides
mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6,124 to 7,635
13765
mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8,077 to 11,128
13766
mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11,684 to 12,574
13767
mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13,151 to 15,531
13768
mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15,776 to 16,734
13769
Group
Condition
mRNA
_5397
mRNA
_5398
mRNA
_5399
mRNA
_5400
mRNA
_5401
13765
13766
13767
13768
13769
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.2
-0.3
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.5
-0.4
-0.5
-0.2
-0.4
auxotrophy
YNB Glucose
+0.2
-0.6
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.5
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
-0.0
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
-0.6
-0.8
+0.3
-0.6
auxotrophy
Dropout Complete
+0.1
-0.5
-0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
-0.2
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.2
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
-0.2
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.4
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
+0.4
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.5
-0.3
+0.1
+0.2
growth on ypd
YPD
-0.0
+0.2
-0.4
-0.1
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
-0.4
-0.6
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
+0.6
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.6
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.7
+0.1
-0.4
-0.1
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
+0.3
+0.4
+0.1
growth on oleic acid
YNB Glucose
+0.6
-0.2
-0.0
+0.2
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
+1.0
-0.1
+0.2
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