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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13766 and 13767 are separated by 555 nucleotides
13767 and 13768 are separated by 576 nucleotides
13768 and 13769 are separated by 244 nucleotides
13769 and 13770 are separated by 375 nucleotides
mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8,077 to 11,128
13766
mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11,684 to 12,574
13767
mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13,151 to 15,531
13768
mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15,776 to 16,734
13769
mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17,110 to 18,696
13770
Group
Condition
mRNA
_5398
mRNA
_5399
mRNA
_5400
mRNA
_5401
mRNA
_5402
13766
13767
13768
13769
13770
auxotrophy
YNB Glucose
-0.6
-0.3
-0.1
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.8
+0.3
-0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.5
-0.2
-0.4
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.6
+0.4
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.2
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.2
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.2
-0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.3
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
-0.1
-0.2
+0.1
auxotrophy
Dropout Complete
-0.5
-0.1
-0.2
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
-0.5
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
+0.2
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.4
-0.1
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
-0.1
+0.8
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.2
+0.7
-0.1
growth on ypd
YPD
+0.2
-0.4
-0.1
+0.6
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
+0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.6
+0.3
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+1.0
-0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.6
+0.3
+0.1
+0.4
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