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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13768 and 13769 are separated by 244 nucleotides
13769 and 13770 are separated by 375 nucleotides
13770 and 13771 are separated by 283 nucleotides
13771 and 13772 are separated by 897 nucleotides
mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13,151 to 15,531
13768
mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15,776 to 16,734
13769
mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17,110 to 18,696
13770
mRNA_5403: 13771 - K00789 metK S-adenosylmethionine synthetase, at 18,980 to 21,610
13771
mRNA_5404: 13772 - Hypothetical Protein, at 22,508 to 23,850
13772
Group
Condition
mRNA
_5400
mRNA
_5401
mRNA
_5402
mRNA
_5403
mRNA
_5404
13768
13769
13770
13771
13772
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
-0.3
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.2
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.3
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.3
N.D.
+0.0
auxotrophy
YNB Glucose
-0.1
-0.1
-0.5
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.4
-0.0
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.1
N.D.
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.2
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
+0.2
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.6
+0.1
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.4
-0.1
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.5
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.8
-0.0
N.D.
+0.1
growth on ypd
YPD
-0.1
+0.6
+0.3
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.2
+0.7
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.4
N.D.
+0.3
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