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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13771 and 13772 are separated by 897 nucleotides
13772 and 13773 are separated by 119 nucleotides
13773 and 13774 are separated by 145 nucleotides
13774 and 13775 are separated by 91 nucleotides
mRNA_5403: 13771 - K00789 metK S-adenosylmethionine synthetase, at 18,980 to 21,610
13771
mRNA_5404: 13772 - Hypothetical Protein, at 22,508 to 23,850
13772
mRNA_5405: 13773 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 23,970 to 26,723
13773
mRNA_5406: 13774 - KOG2742 Predicted oxidoreductase, at 26,869 to 28,382
13774
mRNA_5407: 13775 - K15734 SDR16C5 all-trans-retinol dehydrogenase (NAD+), at 28,474 to 30,165
13775
Group
Condition
mRNA
_5403
mRNA
_5404
mRNA
_5405
mRNA
_5406
mRNA
_5407
13771
13772
13773
13774
13775
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.2
-0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.1
-0.1
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.1
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
-0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.7
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.1
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.2
+0.0
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.6
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.2
+0.3
N.D.
growth on ypd
YPD
N.D.
-0.0
+0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.6
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.4
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.6
+0.7
N.D.
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